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| AARS | CAD | EIF2B2 | GRIN2A | MBD5 | PIGP | SIK1 | STXBP1 | WWOX |
| ACTL6B | CDKL5 | FGF12 | GRIN2B | MDH2 | PLCB1 | SLC12A5 | SYNGAP1 | YWHAG |
| ADAM22 | CHD2 | FOXG1 | GRIN2D | MECP2 | PLP1 | SLC13A5 | SYNJ1 | ZBTB18 |
| ADSL | CHD4 | FOXP2 | GUF1 | MEF2C | PNKP | SLC1A2 | SZT2 | ZEB2 |
| ALG13 | CHRNA5 | FRRS1L | HCN1 | MTHFR | PRRT2 | SLC25A12 | TBC1D24 | |
| AMT | CNPY3 | GABBR2 | HERC2 | NECAP1 | RHOBTB2 | SLC25A22 | TBL1XR1 | |
| AP3B2 | CNTNAP2 | GABRA1 | HNRNPU | NEUROD2 | RNF13 | SLC2A1 | TCF4 | |
| ARHGEF9 | CPLX1 | GABRB1 | IQSEC2 | NRXN1 | SCN1A | SLC35A2 | TRAK1 | |
| ARV1 | CUX2 | GABRB3 | ITPA | NTNG1 | SCN1B | SLC39A13 | TREX1 | |
| ARX | CYFIP2 | GABRD | KCNA2 | NTRK2 | SCN2A | SLC6A1 | TSC1 | |
| BTBD9 | DENND5A | GABRG2 | KCNB1 | PACS2 | SCN3A | SLC9A6 | TSC2 | |
| CACNA1A | DNM1 | GCSH | KCNQ2 | PARS2 | SCN8A | SMC1A | UBA5 | |
| CACNA1E | DOCK7 | GLDC | KCNQ3 | PCDH19 | SCN9A | SPTAN1 | UBE3A | |
| CACNA1H | EEF1A2 | GLS | KCNT1 | PHACTR1 | SHANK3 | ST3GAL3 | WAC | |
| CACNA1I | EHMT1 | GNAO1 | KCNT2 | PIGA | SHROOM4 | STX1B | WDR45 |
